Highlights
- •HCV-specific CD8+ T cell phenotypes and functional responses are not universally restored during DAA-induced HCV clearance.
- •Mitochondrial fitness of virus-specific CD8+ T cells unaltered by cessation of persistent HCV replication.
- •In vitro immune check-point inhibition mediated selective revival of in vitro DAA unresponsive HCV-specific CD8+ T cells.
Background & Aims
Hepatitis C virus (HCV)-specific CD8+ T cells are functionally impaired in chronic
hepatitis C. Even though HCV can now be rapidly and sustainably cleared from chronically
infected patients, the repercussions of HCV clearance on virus-specific CD8+ T cells
remain elusive. Here, we aimed to investigate if HCV clearance by direct-acting antivirals
(DAAs) could restore the functionality of exhausted HCV-specific CD8+ T cell responses.
Methods
HCV-specific CD8+ T cells in peripheral blood were obtained from 40 patients with
chronic HCV infection, during and 6 months following IFN-free DAA therapy. These cells
were analyzed for comprehensive phenotypes, proliferation, cytokine production, mitochondrial
fitness and response to immune-checkpoint blockade.
Results
We show that, unlike activation markers that decreased, surface expression of multiple
co-regulatory receptors on exhausted HCV-specific CD8+ T cells remained unaltered
after clearance of HCV. Likewise, cytokine production by HCV-specific CD8+ T cells
remained impaired following HCV clearance. The proliferative capacity of HCV multimer-specific
CD8+ T cells was not restored in the majority of patients. Enhanced in vitro proliferative expansion of HCV-specific CD8+ T cells during HCV clearance was more
likely in women, patients with low liver stiffness and low alanine aminotransferase
levels in our cohort. Interestingly, HCV-specific CD8+ T cells that did not proliferate
following HCV clearance could preferentially re-invigorate their proliferative capacity
upon in vitro immune-checkpoint inhibition. Moreover, altered mitochondrial dysfunction exhibited
by exhausted HCV-specific CD8+ T cells could not be normalized after HCV clearance.
Conclusion
Taken together, our data implies that exhausted HCV-specific CD8+ T cells remain functionally
and metabolically impaired at multiple levels following HCV clearance in most patients
with chronic hepatitis C. Our results might have implications in cases of re-infection
with HCV and for HCV vaccine development.
Lay summary
Direct-acting antiviral therapy results in cure of hepatitis C virus (HCV) in almost
all treated patients. However, the impacts of HCV cure on immune responses remain
controversial. Whether immune responses to HCV recover is important in cases of re-exposure,
or for the resolution of extrahepatic manifestations. The main finding of our study
was that HCV-specific T cells remain functionally impaired despite HCV clearance.
This finding could explain the fact that HCV cure does not lead to protective immunity
and that re-infections have frequently been observed.
Graphical abstract

Graphical Abstract
Keywords
To read this article in full you will need to make a payment
Purchase one-time access:
Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online accessOne-time access price info
- For academic or personal research use, select 'Academic and Personal'
- For corporate R&D use, select 'Corporate R&D Professionals'
Subscribe:
Subscribe to Journal of HepatologyAlready a print subscriber? Claim online access
Already an online subscriber? Sign in
Register: Create an account
Institutional Access: Sign in to ScienceDirect
References
Author names in bold designate shared co-first authorship
- Innate and adaptive immune responses in HCV infections.J Hepatol. 2014; 61: S14-25
- Insights From antiviral therapy into immune responses to hepatitis B and C virus infection.Gastroenterology. 2019; 156: 369-383
- A heterogeneous hierarchy of co-regulatory receptors regulates exhaustion of HCV-specific CD8 T cells in patients with chronic hepatitis C.J Hepatol. 2015; 62: 31-40
- Coregulation of CD8+ T cell exhaustion by multiple inhibitory receptors during chronic viral infection.Nat Immunol. 2009; 10: 29-37
- Hepatitis C virus (HCV) sequence variation induces an HCV-specific T-cell phenotype analogous to spontaneous resolution.J Virol. 2010; 84: 1656-1663
- Impaired effector function of hepatitis C virus-specific CD8+ T cells in chronic hepatitis C virus infection.J Immunol (Baltimore, Md: 1950). 2002; 169: 3447-3458
- Distinct metabolic requirements of exhausted and functional virus-specific CD8 T cells in the same host.Cell Rep. 2016; 16: 1243-1252
- Bioenergetic insufficiencies due to metabolic alterations regulated by the inhibitory receptor PD-1 are an early driver of CD8(+) T cell exhaustion.Immunity. 2016; 45: 358-373
- Targeting mitochondrial dysfunction can restore antiviral activity of exhausted HBV-specific CD8 T cells in chronic hepatitis B.Nat Med. 2017; 23: 327-336
- Towards interferon-free treatment for all HCV genotypes.Lancet. 2015; 385: 2443-2445
- Challenges and perspectives of direct antivirals for the treatment of hepatitis C virus infection.J Hepatol. 2018; 69: 1178-1187
- Nonreversible MAIT cell-dysfunction in chronic hepatitis C virus infection despite successful interferon-free therapy.Eur J Immunol. 2016; 46: 2204-2210
- Chronic hepatitis C virus infection irreversibly impacts human natural killer cell repertoire diversity.Nat Commun. 2018; 9: 2275
- Direct-acting antiviral-induced hepatitis C virus clearance does not completely restore the altered cytokine and chemokine milieu in patients with chronic hepatitis C.J Infect Dis. 2016; 214: 1965-1974
- Successful interferon-free therapy of chronic hepatitis C virus infection normalizes natural killer cell function.Gastroenterology. 2015; 149 (190-200.e192)
- Immunological analysis during interferon-free therapy for chronic hepatitis C virus infection reveals modulation of the natural killer cell compartment.J Infect Dis. 2016; 213: 216-223
- Early and late changes in natural killer cells in response to ledipasvir/sofosbuvir treatment.Hepatol Commun. 2018; 2: 364-375
- Memory re-differentiation and reduced lymphocyte activation in chronic HCV-infected patients receiving direct-acting antivirals.J Viral Hepatitis. 2015; 22: 983-991
- Type I interferon elevates co-regulatory receptor expression on CMV- and EBV-specific CD8 T cells in chronic hepatitis C.Front Immunol. 2015; 6: 270
- Human gammadelta T cell receptor repertoires in peripheral blood remain stable despite clearance of persistent hepatitis C virus infection by direct-acting antiviral drug therapy.Front Immunol. 2018; 9: 510
- Restoration of HCV-specific CD8+ T cell function by interferon-free therapy.J Hepatol. 2014; 61: 538-543
- TCF1(+) hepatitis C virus-specific CD8(+) T cells are maintained after cessation of chronic antigen stimulation.Nat Commun. 2017; 8: 15050
- Immunodominance of HLA-A2-restricted hepatitis C virus-specific CD8+ T cell responses is linked to naive-precursor frequency.J Virol. 2011; 85: 5232-5236
- Tetramer enrichment reveals the presence of phenotypically diverse hepatitis C virus-specific CD8+ T cells in chronic infection.J Virol. 2015; 89: 25-34
- T cell responses in hepatitis C: the good, the bad and the unconventional.Gut. 2012; 61: 1226-1234
- Metabolic pathways in immune cell activation and quiescence.Immunity. 2013; 38: 633-643
- Defining CD8+ T cells that provide the proliferative burst after PD-1 therapy.Nature. 2016; 537: 417-421
- Follicular CXCR5- expressing CD8(+) T cells curtail chronic viral infection.Nature. 2016; 537: 412-428
- T cell factor 1-expressing memory-like CD8(+) T cells sustain the immune response to chronic viral infections.Immunity. 2016; 45: 415-427
- TCF1(+) hepatitis C virus-specific CD8(+) T cells are maintained after cessation of chronic antigen stimulation.Nat Commun. 2017; 8: 15050
- PD-L1 (B7–H1) and PD-1 pathway blockade for cancer therapy: Mechanisms, response biomarkers, and combinations.Sci Transl Med. 2016; 8: 328rv324
- Coexpression of PD-1, 2B4, CD160 and KLRG1 on exhausted HCV-specific CD8+ T cells is linked to antigen recognition and T cell differentiation.PLoS Pathog. 2010; 6e1000947
- Functional restoration of HCV-specific CD8 T cells by PD-1 blockade is defined by PD-1 expression and compartmentalization.Gastroenterology. 2008; 134 (1937.e1921-1922): 1927-1937
- Bystander hyperactivation of preimmune CD8+ T cells in chronic HCV patients.eLife. 2015; 4e07916
- Progenitor and terminal subsets of CD8+ T cells cooperate to contain chronic viral infection.Science (New York, NY). 2012; 338: 1220-1225
- CD39 expression identifies terminally exhausted CD8+ T cells.PLoS Pathog. 2015; 11e1005177
- Viral immune evasion due to persistence of activated T cells without effector function.J Exp Med. 1998; 188: 2205-2213
- HCV reinfection incidence and spontaneous clearance rates in HIV-positive men who have sex with men in Western Europe.J Hepatol. 2017; 66: 282-287
- Hepatitis C virus treatment and persons who inject drugs.Ann Intern Med. 2016; 164: 203
- Persistent hepatitis C viral replication despite priming of functional CD8+ T cells by combined therapy with a vaccine and a direct-acting antiviral.Hepatology. 2016; 63: 1442-1454
- Hepatitis C virus variants resistant to macrocyclic NS3-4A inhibitors subvert IFN-beta induction by efficient MAVS cleavage.J Hepatol. 2015; 62: 779-784
- Cirrhosis-associated immune dysfunction: distinctive features and clinical relevance.J Hepatol. 2014; 61: 1385-1396
- Systemic inflammation and immune cell phenotypes are associated with neuro-psychiatric symptoms in patients with chronic inflammatory liver diseases.Liver Int. 2018; 38: 2317-2328
- HCC immune surveillance and antiviral therapy of hepatitis C virus infection.Liver Cancer. 2019; 8: 41-65
- Enhanced establishment of a virus carrier state in adult CD4+ T-cell-deficient mice.J Virol. 1994; 68: 4700-4704
- IL-10: achieving balance during persistent viral infection.Curr Top Microbiol Immunol. 2014; 380: 129-144
- Mitochondria are required for antigen-specific T cell activation through reactive oxygen species signaling.Immunity. 2013; 38: 225-236
- T cell metabolism drives immunity.J Exp Med. 2015; 212: 1345-1360
- Convergence of multiple signaling pathways is required to coordinately up-regulate mtDNA and mitochondrial biogenesis during T cell activation.Mitochondrion. 2007; 7: 374-385
- Discrete generation of superoxide and hydrogen peroxide by T cell receptor stimulation: selective regulation of mitogen-activated protein kinase activation and fas ligand expression.J Exp Med. 2002; 195: 59-70
- Mitophagy and quality control mechanisms in mitochondrial maintenance.Curr Biol: CB. 2018; 28: R170-r185
- Mitochondrial ROS fire up T cell activation.Immunity. 2013; 38: 201-202
- A randomized, double-blind, placebo-controlled assessment of BMS-936558, a fully human monoclonal antibody to programmed death-1 (PD-1), in patients with chronic hepatitis C virus infection.PLoS ONE. 2013; 8e63818
- A clinical trial of CTLA-4 blockade with tremelimumab in patients with hepatocellular carcinoma and chronic hepatitis C.J Hepatol. 2013; 59: 81-88
Article info
Publication history
Published online: July 08, 2019
Accepted:
June 19,
2019
Received in revised form:
June 12,
2019
Received:
March 15,
2019
Identification
Copyright
© 2019 Published by Elsevier B.V. on behalf of European Association for the Study of the Liver.